2XRW Transcription date Sep 23, 2010
title Linear Binding Motifs For Jnk And For Calcineurin Antagonist Control The Nuclear Shuttling Of Nfat4
authors T.Barkai, I.Toeoroe, A.Garai, A.Remenyi
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A
Fragment: Residues 2-364
Synonym: Jnk1, Mitogen-Activated Protein Kinase 8 Isoform J Beta2, Mitogen-Activated Protein Kinase 8\,Isoform Cra_d, Flj77387\,Highly Similar To Homo Sapiens Mitogen-Activated Kinase 8 (Mapk8)\,Transcript Variant 4\,Mrna;
Ec: 2.7.11.24
Engineered: Yes
Other_details: Last 20 Residues Truncated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet Derivative

Molecule: Nuclear Factor Of Activated T-Cells\, Cytoplasmic
Chain: B
Fragment: Fragment Of Nfat4, Residues 141-154
Synonym: Pepnfat4, Nf-Atc3, Nfatc3, T-Cell Transcription Fa Nfat4, Nf-At4, Nfatx

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.1651 R_Free 0.1866
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.230 94.130 47.840 90.00 110.74 90.00
method X-Ray Diffractionresolution 1.33 Å
ligand ANP, GOL enzyme Transferase E.C.2.7.11.24 BRENDA
Primary referenceSpecificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove., Garai A, Zeke A, Gogl G, Toro I, Fordos F, Blankenburg H, Barkai T, Varga J, Alexa A, Emig D, Albrecht M, Remenyi A, Sci Signal. 2012 Oct 9;5(245):ra74. doi: 10.1126/scisignal.2003004. PMID:23047924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (2xrw.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 2XRW
  • CSU: Contacts of Structural Units for 2XRW
  • Structure Factors (577 Kb)
  • Retrieve 2XRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XRW from S2C, [Save to disk]
  • Re-refined 2xrw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XRW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XRW, from MSDmotif at EBI
  • Fold representative 2xrw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xrw] [2xrw_A] [2xrw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XRW: [S_TKc ] by SMART
  • Other resources with information on 2XRW
  • Community annotation for 2XRW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science