2XS0 Transcription date Sep 24, 2010
title Linear Binding Motifs For Jnk And For Calcineurin Antagonist Control The Nuclear Shuttling Of Nfat4
authors T.Barkai, I.Toeoroe, A.Garai, A.Remenyi
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A
Synonym: Map Kinase 8, Mapk 8, Stress-Activated Protein Kin Jnk1, Jnk1, C-Jun N-Terminal Kinase 1, Jnk-46, Stress-Acti Protein Kinase 1;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet Derivative

Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic
Chain: B
Fragment: Fragment Of Nfat4, Residues 141-154
Synonym: Nf-Atc3, T-Cell Transcription Factor Nfat4, Nfatx

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.1879 R_Free 0.2457
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.530 106.550 130.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ANP enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove., Garai A, Zeke A, Gogl G, Toro I, Fordos F, Blankenburg H, Barkai T, Varga J, Alexa A, Emig D, Albrecht M, Remenyi A, Sci Signal. 2012 Oct 9;5(245):ra74. doi: 10.1126/scisignal.2003004. PMID:23047924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (2xs0.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 2XS0
  • CSU: Contacts of Structural Units for 2XS0
  • Structure Factors (100 Kb)
  • Retrieve 2XS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XS0 from S2C, [Save to disk]
  • Re-refined 2xs0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XS0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XS0, from MSDmotif at EBI
  • Fold representative 2xs0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xs0_B] [2xs0] [2xs0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XS0: [S_TKc ] by SMART
  • Other resources with information on 2XS0
  • Community annotation for 2XS0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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