2XSZ Hydrolase date Oct 01, 2010
title The Dodecameric Human Ruvbl1:Ruvbl2 Complex With Truncated D
authors S.Gorynia, T.M.Bandeiras, P.M.Matias, F.G.Pinho, C.E.Mcvey, C.Von D.I.Svergun, A.Round, P.Donner, M.A.Carrondo
compound source
Molecule: Ruvb-Like 1
Chain: A, B, C
Synonym: Ruvbl1,49 Kda Tata Box-Binding Protein-Interacting 49 Kda Tbp-Interacting Protein, Tip49a, Pontin 52,Nuclear M Protein 238,Nmp 238,54 Kda Erythrocyte Cytosolic Protein, E Tip60-Associated Protein 54-Alpha, Tap54-Alpha, Ino80 Compl H;
Ec: 3.6.4.12
Engineered: Yes
Other_details: Domain II Was Truncated Between Residues T12 E233. A 4-Residue Linker With Sequence Gppg Was Inserted To The Deleted Region;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet

Molecule: Ruvb-Like 2
Chain: D, E, F
Synonym: Ruvbl2,48 Kda Tata Box-Binding Protein-Interacting 48 Kda Tbp-Interacting Protein, Tip49b, Repressing Pontin 5 52,51 Kda Erythrocyte Cytosolic Protein, Ecp-51, Tip60-Asso Protein 54-Beta, Tap54-Beta, Ino80 Complex Subunit J;
Ec: 3.6.4.12
Engineered: Yes
Other_details: Domain II Was Truncated Between Residues E13 E237. A 4-Residue Linker With Sequence Gppg Was Inserted To The Deleted Region

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet
symmetry Space Group: C 2 2 21
R_factor 0.178 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.824 187.925 244.889 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ATP, MSE enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceStructural and functional insights into a dodecameric molecular machine - The RuvBL1/RuvBL2 complex., Gorynia S, Bandeiras TM, Pinho FG, McVey CE, Vonrhein C, Round A, Svergun DI, Donner P, Matias PM, Carrondo MA, J Struct Biol. 2011 Sep 10. PMID:21933716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (649 Kb) [Save to disk]
  • Biological Unit Coordinates (2xsz.pdb1.gz) 634 Kb
  • LPC: Ligand-Protein Contacts for 2XSZ
  • CSU: Contacts of Structural Units for 2XSZ
  • Structure Factors (412 Kb)
  • Retrieve 2XSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XSZ from S2C, [Save to disk]
  • Re-refined 2xsz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XSZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XSZ, from MSDmotif at EBI
  • Fold representative 2xsz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xsz_C] [2xsz_D] [2xsz] [2xsz_A] [2xsz_E] [2xsz_B] [2xsz_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XSZ: [AAA ] by SMART
  • Other resources with information on 2XSZ
  • Community annotation for 2XSZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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