2XTE Transcription date Oct 06, 2010
title Structure Of The Tbl1 Tetramerisation Domain
authors J.Oberoi, L.Fairall, P.J.Watson, J.A.Greenwood, J.W.R.Schwabe
compound source
Molecule: F-Box-Likewd Repeat-Containing Protein Tbl1x
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: N-Terminal Tetramerisation Domain, Residues 1-90
Synonym: Transducin Beta-Like Protein 1x, Tbl1, Transducin- Protein1\,X-Linked, Smap55;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet
symmetry Space Group: P 21 21 21
R_factor 0.273 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.020 150.190 164.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
Primary referenceStructural basis for the assembly of the SMRT/NCoR core transcriptional repression machinery., Oberoi J, Fairall L, Watson PJ, Yang JC, Czimmerer Z, Kampmann T, Goult BT, Greenwood JA, Gooch JT, Kallenberger BC, Nagy L, Neuhaus D, Schwabe JW, Nat Struct Mol Biol. 2011 Jan 16. PMID:21240272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2xte.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (2xte.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (2xte.pdb3.gz) 41 Kb
  • CSU: Contacts of Structural Units for 2XTE
  • Structure Factors (1156 Kb)
  • Retrieve 2XTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XTE from S2C, [Save to disk]
  • Re-refined 2xte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XTE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XTE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xte_J] [2xte_B] [2xte_C] [2xte_G] [2xte_H] [2xte_E] [2xte_D] [2xte_A] [2xte] [2xte_K] [2xte_I] [2xte_F] [2xte_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XTE: [LisH ] by SMART
  • Other resources with information on 2XTE
  • Community annotation for 2XTE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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