2XV4	Transcription	date	Oct 22, 2010
title	Structure Of Human Rpc62 (Partial)
authors	S.Lefevre, P.Legrand, S.Fribourg
compound		source
Molecule: Dna-Directed Rna Polymerase III Subunit Rpc3 Chain: S Synonym: Short Name=Rna Polymerase III Subunit C3, Dna-Dire Polymerase III Subunit C, Rna Polymerase III 62 Kda Subuni Rpc62, Hrpc62; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Gold(De3) Plyss
symmetry	Space Group: C 1 2 1	R_factor 0.2280 R_Free 0.2561
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.540 69.920 75.970 90.00 112.84 90.00
method	X-Ray Diffraction	resolution	2.95 Å
ligand	PO4	enzyme
Gene Ontology	Chain Function Process Component S
Primary reference	Structure-function analysis of hRPC62 provides insights into RNA polymerase III transcription initiation., Lefevre S, Dumay-Odelot H, El-Ayoubi L, Budd A, Legrand P, Pinaud N, Teichmann M, Fribourg S, Nat Struct Mol Biol. 2011 Mar;18(3):352-8. Epub 2011 Feb 27. PMID:21358628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (2xv4.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 2XV4 CSU: Contacts of Structural Units for 2XV4 Structure Factors (315 Kb) Retrieve 2XV4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2XV4 from S2C, [Save to disk] Re-refined 2xv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XV4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2XV4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2XV4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xv4_S] [2xv4] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2XV4

Community annotation for 2XV4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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