2XV5 Structural Protein date Oct 22, 2010
title Human Lamin A Coil 2b Fragment
authors L.E.Kapinos, P.Burkhard, U.Aebi, H.Herrmann, S.V.Strelkov
compound source
Molecule: Lamin-Ac
Chain: A, B
Fragment: Human Lamin A Fragment, Residues 328-398
Synonym: 70 Kda Lamin, Renal Carcinoma Antigen Ny-Ren-32
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Ppep-Tev
symmetry Space Group: P 21 21 21
R_factor 0.24093 R_Free 0.28412
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.093 50.114 89.745 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Primary referenceSimultaneous Formation of Right- and Left-handed Anti-parallel Coiled-coil Interfaces by a Coil2 Fragment of Human Lamin A., Kapinos LE, Burkhard P, Herrmann H, Aebi U, Strelkov SV, J Mol Biol. 2011 Apr 22;408(1):135-46. Epub 2011 Feb 24. PMID:21354179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2xv5.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2XV5
  • CSU: Contacts of Structural Units for 2XV5
  • Structure Factors (81 Kb)
  • Retrieve 2XV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XV5 from S2C, [Save to disk]
  • Re-refined 2xv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XV5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XV5, from MSDmotif at EBI
  • Fold representative 2xv5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xv5] [2xv5_A] [2xv5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XV5
  • Community annotation for 2XV5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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