2XVV Transport Protein date Oct 28, 2010
title Human Serum Albumin Complexed With Dansyl-L-Asparagine And Myristic Acid
authors J.Ghuman, S.Curry
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.840 38.890 95.520 90.00 106.18 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 9DN, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of binding of fluorescent, site-specific dansylated amino acids to human serum albumin., Ryan AJ, Ghuman J, Zunszain PA, Chung CW, Curry S, J Struct Biol. 2010 Oct 18. PMID:20940056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (2xvv.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2XVV
  • CSU: Contacts of Structural Units for 2XVV
  • Structure Factors (184 Kb)
  • Retrieve 2XVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XVV from S2C, [Save to disk]
  • Re-refined 2xvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XVV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XVV, from MSDmotif at EBI
  • Fold representative 2xvv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xvv] [2xvv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XVV: [ALBUMIN ] by SMART
  • Alignments of the sequence of 2XVV with the sequences similar proteins can be viewed for 2XVV's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2XVV
  • Community annotation for 2XVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science