2XWD X-RAY STRUCTURE OF ACID-BETA-GLUCOSIDASE WITH 5N,6O-(N'-(N-OCTYL)IMINO)NOJIRIMYCIN IN THE ACTIVE SITE date
authors Brumshtein, B., Aguilar-Moncayo, M., Benito, J.M., Mellet, C.Ortiz., Fernandez, J.M.Garcia., Silman, I., Shaaltiel, Y., Sussman, J.L., Futerman, A.H.
compound source
symmetry
R_factor
R_Free 0.21893
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.66
ligand BMA, FUC, LGS, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceCyclodextrin-mediated crystallization of acid beta-glucosidase in complex with amphiphilic bicyclic nojirimycin analogues., Brumshtein B, Aguilar-Moncayo M, Benito JM, Garcia Fernandez JM, Silman I, Shaaltiel Y, Aviezer D, Sussman JL, Futerman AH, Ortiz Mellet C, Org Biomol Chem. 2011 Jun 7;9(11):4160-7. Epub 2011 Apr 11. PMID:21483943
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (2xwd.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (2xwd.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2XWD
  • CSU: Contacts of Structural Units for 2XWD
  • Structure Factors (328 Kb)
  • Retrieve 2XWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XWD from S2C, [Save to disk]
  • Re-refined 2xwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XWD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XWD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xwd_A] [2xwd_B] [2xwd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XWD
  • Community annotation for 2XWD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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