2XWD Hydrolase date Nov 01, 2010
title X-Ray Structure Of Acid-Beta-Glucosidase With 5n,6o-(N'-(N- Octyl)Imino)Nojirimycin In The Active Site
authors B.Brumshtein, M.Aguilar-Moncayo, J.M.Benito, C.Ortiz Mellet, J.M.Garcia Fernandez, I.Silman, Y.Shaaltiel, J.L.Sussman, A.H.F
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Acid-Beta-Glucosidase, Alglucerase, Beta-Glucocerebrosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Imiglucerase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Daucus Carota
Expression_system_common: Carrot
Expression_system_taxid: 4039
symmetry Space Group: P 1 21 1
R_factor 0.15003 R_Free 0.21893
length a length b length c angle alpha angle beta angle gamma
68.036 96.617 83.164 90.00 103.69 90.00
method X-Ray Diffractionresolution 2.66 Å
ligand BMA, FUC, LGS, MAN, NAG, SO4 enzyme Hydrolase E.C. BRENDA
A, B
  • negative regulation of inter...

  • Primary referenceCyclodextrin-mediated crystallization of acid beta-glucosidase in complex with amphiphilic bicyclic nojirimycin analogues., Brumshtein B, Aguilar-Moncayo M, Benito JM, Garcia Fernandez JM, Silman I, Shaaltiel Y, Aviezer D, Sussman JL, Futerman AH, Ortiz Mellet C, Org Biomol Chem. 2011 Jun 7;9(11):4160-7. Epub 2011 Apr 11. PMID:21483943
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (2xwd.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (2xwd.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 2XWD
  • CSU: Contacts of Structural Units for 2XWD
  • Structure Factors (328 Kb)
  • Retrieve 2XWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XWD from S2C, [Save to disk]
  • Re-refined 2xwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 2XWD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XWD, from MSDmotif at EBI
  • Fold representative 2xwd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xwd_A] [2xwd_B] [2xwd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2XWD
  • Community annotation for 2XWD at PDBWiki (http://pdbwiki.org)
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