2XWE Hydrolase date Nov 02, 2010
title X-Ray Structure Of Acid-Beta-Glucosidase With 5n,6s-(N'-(N- Octyl)Imino)-6-Thionojirimycin In The Active Site
authors B.Brumshtein, M.Aguilar-Moncayo, J.M.Benito, C.Ortiz Mellet, J.M.Garcia Fernandez, I.Silman, Y.Shaaltiel, J.L.Sussman, A.H.F
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Acid-Beta-Glucosidase, Alglucerase, Beta-Glucocerebrosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Imiglucerase;
Ec: 3.2.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Daucus Carota
Expression_system_common: Carrot
Expression_system_taxid: 4039
symmetry Space Group: P 1 21 1
R_factor 0.14994 R_Free 0.21337
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.142 96.693 82.970 90.00 102.84 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand AMF, BMA, FUC, K, NAG, PO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceCyclodextrin-mediated crystallization of acid beta-glucosidase in complex with amphiphilic bicyclic nojirimycin analogues., Brumshtein B, Aguilar-Moncayo M, Benito JM, Garcia Fernandez JM, Silman I, Shaaltiel Y, Aviezer D, Sussman JL, Futerman AH, Ortiz Mellet C, Org Biomol Chem. 2011 Jun 7;9(11):4160-7. Epub 2011 Apr 11. PMID:21483943
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (2xwe.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (2xwe.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 2XWE
  • CSU: Contacts of Structural Units for 2XWE
  • Structure Factors (625 Kb)
  • Retrieve 2XWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XWE from S2C, [Save to disk]
  • Re-refined 2xwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XWE in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XWE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XWE, from MSDmotif at EBI
  • Fold representative 2xwe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xwe] [2xwe_B] [2xwe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2XWE with the sequences similar proteins can be viewed for 2XWE's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2XWE
  • Community annotation for 2XWE at PDBWiki (http://pdbwiki.org)
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