2XWJ Hydrolase date Nov 04, 2010
title Crystal Structure Of Complement C3b In Complex With Factor B
authors F.Forneris, D.Ricklin, J.Wu, A.Tzekou, R.S.Wallace, J.D.Lambris, P
compound source
Molecule: Complement C3 Beta Chain
Chain: A, C, E, G
Fragment: Residues 23-667
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood

Molecule: Complement C3 Alpha Chain
Chain: B, D, F, H
Fragment: Residues 749-1663
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood

Molecule: Complement Factor B
Chain: I, J, K, L
Fragment: Complement Factor B
Synonym: C3c5 Convertase, Glycine-Rich Beta Glycoprotein, Pbf2, Properdin Factor B;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-Es
Expression_system_vector: Pupe06.08
Expression_system_plasmid: Pupe.05.05
symmetry Space Group: C 2 2 21
R_factor 0.2275 R_Free 0.2808
crystal
cell
length a length b length c angle alpha angle beta angle gamma
262.160 297.870 341.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand NAG, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


J, K, I, L


Primary referenceStructures of C3b in complex with factors B and D give insight into complement convertase formation., Forneris F, Ricklin D, Wu J, Tzekou A, Wallace RS, Lambris JD, Gros P, Science. 2010 Dec 24;330(6012):1816-20. PMID:21205667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3109 Kb) [Save to disk]
  • Biological Unit Coordinates (2xwj.pdb1.gz) 786 Kb
  • Biological Unit Coordinates (2xwj.pdb2.gz) 787 Kb
  • Biological Unit Coordinates (2xwj.pdb3.gz) 788 Kb
  • Biological Unit Coordinates (2xwj.pdb4.gz) 790 Kb
  • LPC: Ligand-Protein Contacts for 2XWJ
  • CSU: Contacts of Structural Units for 2XWJ
  • Structure Factors (4874 Kb)
  • Retrieve 2XWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XWJ from S2C, [Save to disk]
  • Re-refined 2xwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XWJ, from MSDmotif at EBI
  • Fold representative 2xwj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xwj_L] [2xwj_E] [2xwj_C] [2xwj_F] [2xwj_H] [2xwj_K] [2xwj_I] [2xwj_B] [2xwj_J] [2xwj_G] [2xwj] [2xwj_A] [2xwj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2XWJ: [A2M] [A2M_N_2] [A2M_recep] [C345C] [CCP] [Thiol-ester_cl] [Tryp_SPc] [VWA ] by SMART
  • Other resources with information on 2XWJ
  • Community annotation for 2XWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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