OCA Atlas for 2XX8

2XX8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1NE, GLU, SO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, A

Primary reference

Integration of Lead Optimization with Crystallography for a Membrane-Bound Ion Channel Target: Discovery of a New Class of AMPA Receptor Positive Allosteric Modulators., Ward SE, Harries M, Aldegheri L, Austin NE, Ballantine S, Ballini E, Bradley DM, Bax BD, Clarke BP, Harris AJ, Harrison SA, Melarange RA, Mookherjee C, Mosley J, Dal Negro G, Oliosi B, Smith KJ, Thewlis KM, Woollard PM, Yusaf SP, J Med Chem. 2010 Dec 3. PMID:21128618

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]

Biological Unit Coordinates (2xx8.pdb1.gz) 89 Kb

Biological Unit Coordinates (2xx8.pdb2.gz) 92 Kb

LPC: Ligand-Protein Contacts for 2XX8

CSU: Contacts of Structural Units for 2XX8

Structure Factors (918 Kb)

Retrieve 2XX8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2XX8 from S2C, [Save to disk]

Re-refined 2xx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2XX8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2xx8] [2xx8_A] [2xx8_B] [2xx8_C]

SWISS-PROT database:

Domains found in 2XX8: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART

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