2XYN Transferase date Nov 18, 2010
title Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
authors E.Salah, E.Ugochukwu, J.M.Elkins, A.J.Barr, B.Shrestha, P.Savitsk P.Mahajan, J.R.C.Muniz, W.W.Yue, A.Chaikuad, F.Von Delft, C.Boun C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, Structural Genom Consortium (Sgc)
compound source
Molecule: Tyrosine-Protein Kinase Abl2
Chain: A, B, C
Fragment: Residues 243-510
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 2, Related Gene Protein, Tyrosine-Protein Kinase Arg, Abl2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 32 2 1
R_factor 0.246 R_Free 0.284
length a length b length c angle alpha angle beta angle gamma
170.500 170.500 100.651 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.81 Å
ligand CL, NA, VX6 BindingDB enzyme Transferase E.C. BRENDA
note 2XYN supersedes 3NSV
A, C, B

Primary referenceCrystal Structures of ABL-Related Gene (ABL2) in Complex with Imatinib, Tozasertib (VX-680), and a Type I Inhibitor of the Triazole Carbothioamide Class., Salah E, Ugochukwu E, Barr AJ, von Delft F, Knapp S, Elkins JM, J Med Chem. 2011 Mar 18. PMID:21417343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (2xyn.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (2xyn.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (2xyn.pdb3.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 2XYN
  • CSU: Contacts of Structural Units for 2XYN
  • Structure Factors (2182 Kb)
  • Retrieve 2XYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XYN from S2C, [Save to disk]
  • Re-refined 2xyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2XYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2XYN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2XYN, from MSDmotif at EBI
  • Fold representative 2xyn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xyn_B] [2xyn] [2xyn_A] [2xyn_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2XYN: [TyrKc ] by SMART
  • Other resources with information on 2XYN
  • Community annotation for 2XYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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