2XZG Endocytosis date Nov 25, 2010
title Clathrin Terminal Domain Complexed With Pitstop 1
authors H.Bulut, L.Von Kleist, W.Saenger, V.Haucke
compound source
Molecule: Clathrin Heavy Chain 1
Chain: A
Fragment: N-Terminal Domain, Residues 1-364
Synonym: Clathrin Heavy Chain On Chromosome 17, Clh-17
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.159 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.340 73.915 84.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ACT, GOL, PEG, VH1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of the clathrin terminal domain in regulating coated pit dynamics revealed by small molecule inhibition., von Kleist L, Stahlschmidt W, Bulut H, Gromova K, Puchkov D, Robertson MJ, Macgregor KA, Tomlin N, Pechstein A, Chau N, Chircop M, Sakoff J, von Kries JP, Saenger W, Krausslich HG, Shupliakov O, Robinson PJ, McCluskey A, Haucke V, Cell. 2011 Aug 5;146(3):471-84. PMID:21816279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2xzg.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2XZG
  • CSU: Contacts of Structural Units for 2XZG
  • Structure Factors (395 Kb)
  • Retrieve 2XZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2XZG from S2C, [Save to disk]
  • Re-refined 2xzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2XZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2XZG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2XZG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2xzg] [2xzg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2XZG
  • Community annotation for 2XZG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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