OCA Atlas for 2Y1R

2Y1R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

SRT

enzyme

Primary reference

Structure and mechanism of the hexameric MecA-ClpC molecular machine., Wang F, Mei Z, Qi Y, Yan C, Hu Q, Wang J, Shi Y, Nature. 2011 Mar 2. PMID:21368759

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (587 Kb) [Save to disk]

Biological Unit Coordinates (2y1r.pdb1.gz) 49 Kb

Biological Unit Coordinates (2y1r.pdb2.gz) 49 Kb

Biological Unit Coordinates (2y1r.pdb3.gz) 49 Kb

Biological Unit Coordinates (2y1r.pdb4.gz) 50 Kb

Biological Unit Coordinates (2y1r.pdb5.gz) 49 Kb

Biological Unit Coordinates (2y1r.pdb6.gz) 46 Kb

Biological Unit Coordinates (2y1r.pdb7.gz) 48 Kb

Biological Unit Coordinates (2y1r.pdb8.gz) 49 Kb

Biological Unit Coordinates (2y1r.pdb9.gz) 36 Kb

LPC: Ligand-Protein Contacts for 2Y1R

CSU: Contacts of Structural Units for 2Y1R

Structure Factors (840 Kb)

Retrieve 2Y1R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2Y1R from S2C, [Save to disk]

Re-refined 2y1r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y1R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y1r_J] [2y1r_K] [2y1r_L] [2y1r_M] [2y1r_N] [2y1r_O] [2y1r_P] [2y1r] [2y1r_A] [2y1r_B] [2y1r_C] [2y1r_D] [2y1r_E] [2y1r_F] [2y1r_G] [2y1r_H] [2y1r_I]

SWISS-PROT database:

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