2Y4T Chaperone date Jan 10, 2011
title Crystal Structure Of The Human Co-Chaperone P58(Ipk)
authors M.Svard, E.I.Biterova, J.M.Bourhis, J.E.Guy
compound source
Molecule: Dnaj Homolog Subfamily C Member 3
Chain: A, B, C
Fragment: Residues 35-461
Synonym: Interferon-Induced\,Double-Stranded Rna-Activated Kinase Inhibitor, Protein Kinase Inhibitor Of 58 Kda, Prot Kinase Inhibitor P58, P58ipk;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
Expression_system_plasmid: P58ipk_6
symmetry Space Group: H 3 2
R_factor 0.24338 R_Free 0.29058
crystal
cell
length a length b length c angle alpha angle beta angle gamma
212.250 212.250 283.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • protein kinase inhibitor act...


  • Primary referenceThe crystal structure of the human co-chaperone p58., Svard M, Biterova EI, Bourhis JM, Guy JE, PLoS One. 2011;6(7):e22337. Epub 2011 Jul 25. PMID:21799829
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (435 Kb) [Save to disk]
  • Biological Unit Coordinates (2y4t.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (2y4t.pdb2.gz) 146 Kb
  • Biological Unit Coordinates (2y4t.pdb3.gz) 146 Kb
  • CSU: Contacts of Structural Units for 2Y4T
  • Structure Factors (2332 Kb)
  • Retrieve 2Y4T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y4T from S2C, [Save to disk]
  • Re-refined 2y4t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y4T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y4T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y4T, from MSDmotif at EBI
  • Fold representative 2y4t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y4t_A] [2y4t_C] [2y4t_B] [2y4t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2Y4T: [DnaJ] [TPR ] by SMART
  • Other resources with information on 2Y4T
  • Community annotation for 2Y4T at PDBWiki (http://pdbwiki.org)
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