2Y4U Chaperone date Jan 10, 2011
title Crystal Structure Of Human P58(Ipk) In Space Group P312
authors M.Svard, E.I.Biterova, J.M.Bourhis, J.E.Guy
compound source
Molecule: Dnaj Homolog Subfamily C Member 3
Chain: A
Fragment: Residues 35-461
Synonym: Interferon-Induced\,Double-Stranded Rna-Activated Kinase Inhibitor, Protein Kinase Inhibitor Of 58 Kda, Prot Kinase Inhibitor P58ipk;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
Expression_system_plasmid: P58ipk_6
symmetry Space Group: P 3 1 2
R_factor 0.24418 R_Free 0.28631
length a length b length c angle alpha angle beta angle gamma
124.620 124.620 92.220 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand MSE enzyme
  • protein kinase inhibitor act...

  • Primary referenceThe crystal structure of the human co-chaperone p58., Svard M, Biterova EI, Bourhis JM, Guy JE, PLoS One. 2011;6(7):e22337. Epub 2011 Jul 25. PMID:21799829
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (2y4u.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (2y4u.pdb2.gz) 428 Kb
  • LPC: Ligand-Protein Contacts for 2Y4U
  • CSU: Contacts of Structural Units for 2Y4U
  • Structure Factors (745 Kb)
  • Retrieve 2Y4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y4U from S2C, [Save to disk]
  • Re-refined 2y4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y4U, from MSDmotif at EBI
  • Fold representative 2y4u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y4u] [2y4u_A]
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  • Domains found in 2Y4U: [DnaJ] [TPR ] by SMART
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