2Y5C Electron Transport date Jan 12, 2011
title Structure Of Human Ferredoxin 2 (Fdx2)In Complex With 2fe2s Cluster
authors H.Webert, A.Hobler, A.D.Sheftel, S.Molik, M.Maestre-Reyna, L.O.E D.Vorniscescu, M.Keusgen, F.Hannemann, R.Bernhardt, R.Lill
compound source
Molecule: Adrenodoxin-Like Protein, Mitochondrial
Chain: A, B
Fragment: Residues 66-171
Synonym: Ferredoxin-1-Like Protein, Human Ferredoxin 2
Engineered: Yes
Other_details: Holoform With 2fe2s Cluster
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paskiba43plus
symmetry Space Group: P 1 21 1
R_factor 0.17281 R_Free 0.20051
length a length b length c angle alpha angle beta angle gamma
51.380 35.450 75.510 90.00 105.13 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand FES, SO4 enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2y5c.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (2y5c.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 2Y5C
  • CSU: Contacts of Structural Units for 2Y5C
  • Structure Factors (2012 Kb)
  • Retrieve 2Y5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y5C from S2C, [Save to disk]
  • Re-refined 2y5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y5C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y5C, from MSDmotif at EBI
  • Fold representative 2y5c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y5c_A] [2y5c] [2y5c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2Y5C
  • Community annotation for 2Y5C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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