2Y69 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CHD, CU, CUA, DMU, HEA, MG, OXY, PEK, PGV, TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, O
  • cytochrome-c oxidase activit...


  • C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


  • D, Q
  • cytochrome-c oxidase activit...


  • F, S


    G, T
  • cytochrome-c oxidase activit...
  • enzyme regulator activity


  • H, U


    J, W
  • cytochrome-c oxidase activit...
  • electron transfer activity


  • N, A


    R, E
  • cytochrome-c oxidase activit...


  • V, I
  • cytochrome-c oxidase activit...


  • X, K
  • cytochrome-c oxidase activit...


  • Y, L
  • cytochrome-c oxidase activit...


  • Z, M
  • cytochrome-c oxidase activit...


  • Primary referenceA combined quantum chemical and crystallographic study on the oxidized binuclear center of cytochrome c oxidase., Kaila VR, Oksanen E, Goldman A, Bloch DA, Verkhovsky MI, Sundholm D, Wikstrom M, Biochim Biophys Acta. 2011 Jan 4. PMID:21211513
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (618 Kb) [Save to disk]
  • Biological Unit Coordinates (2y69.pdb1.gz) 305 Kb
  • Biological Unit Coordinates (2y69.pdb2.gz) 306 Kb
  • LPC: Ligand-Protein Contacts for 2Y69
  • CSU: Contacts of Structural Units for 2Y69
  • Structure Factors (6551 Kb)
  • Retrieve 2Y69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y69 from S2C, [Save to disk]
  • Re-refined 2y69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y69_C] [2y69_D] [2y69_E] [2y69_F] [2y69_G] [2y69_H] [2y69_I] [2y69_J] [2y69_K] [2y69_L] [2y69_M] [2y69_N] [2y69_O] [2y69_P] [2y69_Q] [2y69_R] [2y69_S] [2y69_T] [2y69_U] [2y69_V] [2y69_W] [2y69] [2y69_B] [2y69_X] [2y69_A] [2y69_Y] [2y69_Z]
  • SWISS-PROT database:

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