2Y6D Hydrolase date Jan 20, 2011
title The Discovery Of Mmp7 Inhibitors Exploiting A Novel Selectiv Trigger
authors K.Edman, M.Furber, P.Hemsley, C.Johansson, G.Pairaudeau, J.Peters M.Stocks, A.Tervo, A.Ward, E.Wells, L.Wissler
compound source
Molecule: Matrilysin
Chain: A
Synonym: Matrin, Matrix Metalloproteinase-7, Mmp-7, Pump-1 Protease, Uterine Metalloproteinase, Mmp7;
Ec: 3.4.24.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.19644 R_Free 0.21610
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.590 76.590 60.924 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CA, SO4, TQJ, ZN enzyme Hydrolase E.C.3.4.24.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Discovery of MMP7 Inhibitors Exploiting a Novel Selectivity Trigger., Edman K, Furber M, Hemsley P, Johansson C, Pairaudeau G, Petersen J, Stocks M, Tervo A, Ward A, Wells E, Wissler L, ChemMedChem. 2011 May 2;6(5):769-73. doi: 10.1002/cmdc.201000550. Epub, 2011 Feb 18. PMID:21520417
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2y6d.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 2Y6D
  • CSU: Contacts of Structural Units for 2Y6D
  • Structure Factors (318 Kb)
  • Retrieve 2Y6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y6D from S2C, [Save to disk]
  • Re-refined 2y6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y6D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y6d] [2y6d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y6D: [ZnMc ] by SMART
  • Other resources with information on 2Y6D
  • Community annotation for 2Y6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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