2Y6W Apoptosis date Jan 27, 2011
title Structure Of A Bcl-W Dimer
authors E.F.Lee, M.Evangelista, A.Pettikiriarachchi, C.Dogovski, M.A.Per P.M.Colman, W.D.Fairlie
compound source
Molecule: Bcl-2-Like Protein 2
Chain: A, B
Fragment: C-Terminal Truncation, Residues 1-164
Synonym: Bcl-W, Bcl2-L-2, Apoptosis Regulator Bcl-W
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: P 43 21 2
R_factor 0.199 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.227 76.227 112.847 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of a BCL-W Domain-Swapped Dimer: Implications for the Function of BCL-2 Family Proteins., Lee EF, Dewson G, Smith BJ, Evangelista M, Pettikiriarachchi A, Dogovski C, Perugini MA, Colman PM, Fairlie WD, Structure. 2011 Oct 12;19(10):1467-76. PMID:22000515
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2y6w.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2Y6W
  • CSU: Contacts of Structural Units for 2Y6W
  • Structure Factors (139 Kb)
  • Retrieve 2Y6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y6W from S2C, [Save to disk]
  • Re-refined 2y6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y6W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Y6W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y6w] [2y6w_B] [2y6w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2Y6W: [BCL] [BH4 ] by SMART
  • Other resources with information on 2Y6W
  • Community annotation for 2Y6W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science