2Y8Q	Transferase	date	Feb 09, 2011
title	Structure Of The Regulatory Fragment Of Mammalian Ampk In Co One Adp
authors	B.Xiao, M.J.Sanders, E.Underwood, R.Heath, F.Mayer, D.Carmena, C.J P.A.Walker, J.F.Eccleston, L.F.Haire, P.Saiu, S.A.Howell, R.Aasl S.R.Martin, D.Carling, S.J.Gamblin
compound		source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit Chain: A Fragment: Residues 406-555 Synonym: Ampk Subunit Alpha-1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-2 Chain: B Fragment: Residues 187-272 Synonym: Ampk Subunit Beta-2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1 Chain: E Synonym: Ampk Gamma1, Ampk Subunit Gamma-1, Ampkg Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.232 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.026 119.918 130.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ADP, AMP	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A B E
Primary reference	Structure of mammalian AMPK and its regulation by ADP., Xiao B, Sanders MJ, Underwood E, Heath R, Mayer FV, Carmena D, Jing C, Walker PA, Eccleston JF, Haire LF, Saiu P, Howell SA, Aasland R, Martin SR, Carling D, Gamblin SJ, Nature. 2011 Apr 14;472(7342):230-3. Epub 2011 Mar 13. PMID:21399626

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (2y8q.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 2Y8Q CSU: Contacts of Structural Units for 2Y8Q Structure Factors (140 Kb) Retrieve 2Y8Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Y8Q from S2C, [Save to disk] Re-refined 2y8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Y8Q in 3D

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Visual 3D analysis of 2Y8Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Y8Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2y8q_E] [2y8q_A] [2y8q_B] [2y8q] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2Y8Q: [AMPKBI] [CBS ] by SMART

Other resources with information on 2Y8Q

Community annotation for 2Y8Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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