2Y9Q Transferase date Feb 16, 2011
title Crystal Structure Of Human Erk2 Complexed With A Mapk Dockin
authors T.Barkai, A.Garai, I.Toeroe, A.Remenyi
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Map Kinase 1, Mapk 1, Ert1, Extracellular Signal-R Kinase 2, Erk-2, Map Kinase Isoform P42, P42-Mapk, Mitogen-Activated Protein Kinase 2, Map Kinase 2, Mapk 2,
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet

Molecule: Map Kinase-Interacting Serinethreonine-Protein K
Chain: B
Fragment: C-Terminal Docking Peptide, Residues 434-451
Synonym: Map Kinase Signal-Integrating Kinase 1, Mnk1
Ec: 2.7.11.1
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.1550 R_Free 0.1768
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.360 65.880 95.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand ANP enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • regulation of cellular pH

  • Primary referenceSpecificity of linear motifs that bind to a common mitogen-activated protein kinase docking groove., Garai A, Zeke A, Gogl G, Toro I, Fordos F, Blankenburg H, Barkai T, Varga J, Alexa A, Emig D, Albrecht M, Remenyi A, Sci Signal. 2012 Oct 9;5(245):ra74. doi: 10.1126/scisignal.2003004. PMID:23047924
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (2y9q.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 2Y9Q
  • CSU: Contacts of Structural Units for 2Y9Q
  • Structure Factors (928 Kb)
  • Retrieve 2Y9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y9Q from S2C, [Save to disk]
  • Re-refined 2y9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y9Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y9Q, from MSDmotif at EBI
  • Fold representative 2y9q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y9q] [2y9q_A] [2y9q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y9Q: [S_TKc ] by SMART
  • Other resources with information on 2Y9Q
  • Community annotation for 2Y9Q at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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