2Y9U Apoptosis date Feb 16, 2011
title Structural Basis Of P63a Sam Domain Mutants Involved In Aec
authors A.Sathyamurthy, S.M.V.Freund, C.M.Johnson, M.D.Allen
compound source
Molecule: Tumor Protein 63
Chain: A
Fragment: Sam Domain, Residues 545-611
Synonym: Chronic Ulcerative Stomatitis Protein, Keratinocyt Transcription Factor Ket, Transformation-Related Protein 63 Protein P73-Like, P40, P51, P63, Cusp, Tp63, P73l;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Modified Prseta
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
34.624 38.309 44.516 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand SO4 enzyme
note 2Y9U is a representative structure

Primary referenceStructural basis of p63alpha SAM domain mutants involved in AEC syndrome., Sathyamurthy A, Freund SM, Johnson CM, Allen MD, Bycroft M, FEBS J. 2011 Aug;278(15):2680-8. doi: 10.1111/j.1742-4658.2011.08194.x., Epub 2011 Jun 20. PMID:21615690
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (2y9u.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2Y9U
  • CSU: Contacts of Structural Units for 2Y9U
  • Structure Factors (54 Kb)
  • Retrieve 2Y9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Y9U from S2C, [Save to disk]
  • Re-refined 2y9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Y9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Y9U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Y9U, from MSDmotif at EBI
  • Fold representative 2y9u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2y9u] [2y9u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2Y9U: [SAM ] by SMART
  • Other resources with information on 2Y9U
  • Community annotation for 2Y9U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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