2YD9	Hydrolase	date	Mar 18, 2011
title	Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Re Protein Tyrosine Phosphatase Sigma
authors	C.H.Coles, Y.Shen, A.P.Tenney, C.Siebold, G.C.Sutton, W.Lu, J.T.Ga E.Y.Jones, J.G.Flanagan, A.R.Aricescu
compound		source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase S Chain: A Fragment: Ig1-3, Residues 30-321 Synonym: R-Ptp-S, Receptor-Type Tyrosine-Protein Phosphatas Ptp-Sigma, Receptor Protein Tyrosine Phosphatase Sigma; Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid Expression_system_vector: Phlsec
symmetry	Space Group: I 2 2 2	R_factor 0.247 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.699 90.043 143.283 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	B3P, CL, IOD, NAG	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Primary reference	Proteoglycan-Specific Molecular Switch for RPTP{sigma} Clustering and Neuronal Extension., Coles CH, Shen Y, Tenney AP, Siebold C, Sutton GC, Lu W, Gallagher JT, Jones EY, Flanagan JG, Aricescu AR, Science. 2011 Mar 31. PMID:21454754

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (2yd9.pdb1.gz) 181 Kb LPC: Ligand-Protein Contacts for 2YD9 CSU: Contacts of Structural Units for 2YD9 Structure Factors (208 Kb) Retrieve 2YD9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YD9 from S2C, [Save to disk] Re-refined 2yd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YD9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yd9_A] [2yd9] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YD9: [IGc2 ] by SMART

Other resources with information on 2YD9

Community annotation for 2YD9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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