2YEJ Chaperone date Mar 25, 2011
title Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening
authors S.D.Roughley, R.E.Hubbard, L.M.Baker
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Atp-Binding Domain, Residues 9-236
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet19
symmetry Space Group: I 2 2 2
R_factor 0.24588 R_Free 0.34927
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.038 90.352 98.858 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG, XQK, ZZ3 BindingDB enzyme
Primary referenceHow Well Can Fragments Explore Accessed Chemical Space? A Case Study from Heat Shock Protein 90., Roughley SD, Hubbard RE, J Med Chem. 2011 May 24. PMID:21561141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2yej.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2YEJ
  • CSU: Contacts of Structural Units for 2YEJ
  • Structure Factors (710 Kb)
  • Retrieve 2YEJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YEJ from S2C, [Save to disk]
  • Re-refined 2yej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YEJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YEJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YEJ, from MSDmotif at EBI
  • Fold representative 2yej from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yej_A] [2yej]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YEJ: [HATPase_c ] by SMART
  • Other resources with information on 2YEJ
  • Community annotation for 2YEJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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