2YFX Transferase date Apr 08, 2011
title Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Com Crizotinib
authors M.Mctigue, Y.Deng, W.Liu, A.Brooun
compound source
Molecule: Tyrosine-Protein Kinase Receptor
Chain: A
Fragment: Kinase Domain, Residues 105-423
Synonym: Anaplastic Lymphoma Kinase
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.234
length a length b length c angle alpha angle beta angle gamma
51.721 57.174 105.253 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand VGH BindingDB enzyme Transferase E.C. BRENDA

Primary referenceThe design of potent and selective inhibitors to overcome clinical ALK mutations resistant to crizotinib., Huang Q, Johnson TW, Bailey S, Brooun A, Bunker KD, Burke BJ, Collins MR, Cook A, Cui JJ, Dack KN, Deal JG, Deng YL, Dinh DM, Engstrom LD, He M, Hoffman J, Hoffman RL, Shen H, Johnson P, Kania RS, Lam H, Lam JL, Le P, Li Q, Lingardo L, Liu W, West Lu M, McTigue MA, Palmer CL, Richardson PF, Sach NW, Smeal T, Smith GL, Stewart AE, Timofeevski SL, Tsaparikos K, Wang H, Zhu H, Zhu J, Zou HY, Edwards M, J Med Chem. 2014 Jan 16. PMID:24432909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2yfx.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2YFX
  • CSU: Contacts of Structural Units for 2YFX
  • Structure Factors (297 Kb)
  • Retrieve 2YFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YFX from S2C, [Save to disk]
  • Re-refined 2yfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YFX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YFX, from MSDmotif at EBI
  • Fold representative 2yfx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yfx_A] [2yfx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YFX: [TyrKc ] by SMART
  • Other resources with information on 2YFX
  • Community annotation for 2YFX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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