2YGD Chaperone date Apr 13, 2011
title Molecular Architectures Of The 24meric Eye Lens Chaperone Alphab-Crystallin Elucidated By A Triple Hybrid Approach
authors N.Braun, M.Zacharias, J.Peschek, A.Kastenmueller, J.Zou, M.Hanzli M.Haslbeck, J.Rappsilber, J.Buchner, S.Weinkauf
compound source
Molecule: Alpha-Crystallin B Chain
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R U, V, W, X;
Synonym: Alphab Crystallin, Alpha(B)-Crystallin, Heat Shock Beta-5, Hspb5, Renal Carcinoma Antigen Ny-Ren-27, Rosentha Component;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.40 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceMultiple molecular architectures of the eye lens chaperone alphaB-crystallin elucidated by a triple hybrid approach., Braun N, Zacharias M, Peschek J, Kastenmuller A, Zou J, Hanzlik M, Haslbeck M, Rappsilber J, Buchner J, Weinkauf S, Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20491-6. Epub 2011 Dec 5. PMID:22143763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]
  • Biological Unit Coordinates (2ygd.pdb1.gz) 584 Kb
  • CSU: Contacts of Structural Units for 2YGD
  • Retrieve 2YGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YGD from S2C, [Save to disk]
  • View 2YGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YGD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YGD, from MSDmotif at EBI
  • Fold representative 2ygd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ygd_Q] [2ygd_A] [2ygd_H] [2ygd_I] [2ygd_W] [2ygd] [2ygd_S] [2ygd_R] [2ygd_V] [2ygd_P] [2ygd_J] [2ygd_L] [2ygd_K] [2ygd_B] [2ygd_E] [2ygd_N] [2ygd_C] [2ygd_X] [2ygd_O] [2ygd_U] [2ygd_G] [2ygd_F] [2ygd_T] [2ygd_D] [2ygd_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2YGD
  • Community annotation for 2YGD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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