2YHN	Ligase	date	May 04, 2011
title	The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Ldl Receptor
authors	L.Fairall, B.T.Goult, C.J.Millard, P.Tontonoz, J.W.R.Schwabe
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Mylip Chain: A, B Fragment: Ring, Residues 369-445 Synonym: Inducible Degrader Of The Ldl-Receptor, Idol, Myos Regulatory Light Chain Interacting Protein, Mir; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: I 1 2 1	R_factor 0.228 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.260 22.770 87.838 90.00 116.82 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	The IDOL-UBE2D complex mediates sterol-dependent degradation of the LDL receptor., Zhang L, Fairall L, Goult BT, Calkin AC, Hong C, Millard CJ, Tontonoz P, Schwabe JW, Genes Dev. 2011 Jun 15;25(12):1262-74. PMID:21685362

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (2yhn.pdb1.gz) 18 Kb LPC: Ligand-Protein Contacts for 2YHN CSU: Contacts of Structural Units for 2YHN Structure Factors (160 Kb) Retrieve 2YHN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YHN from S2C, [Save to disk] Re-refined 2yhn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YHN in 3D

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Visual 3D analysis of 2YHN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YHN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yhn] [2yhn_A] [2yhn_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YHN: [RING ] by SMART

Other resources with information on 2YHN

Community annotation for 2YHN at PDBWiki (http://pdbwiki.org)

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