2YHS Cell Cycle date May 05, 2011
title Structure Of The E. Coli Srp Receptor Ftsy
authors G.Stjepanovic, G.Bange, K.Wild, I.Sinning
compound source
Molecule: Cell Division Protein Ftsy
Chain: A
Fragment: Ng Domain
Synonym: Ftsy
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C43
symmetry Space Group: P 21 21 2
R_factor 0.178 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.358 108.412 31.902 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLipids trigger a conformational switch regulating signal recognition particle (SRP)-mediated protein targeting., Stjepanovic G, Kapp K, Bange G, Graf C, Parlitz R, Wild K, Mayer MP, Sinning I, J Biol Chem. 2011 May 3. PMID:21543314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (2yhs.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2YHS
  • CSU: Contacts of Structural Units for 2YHS
  • Structure Factors (632 Kb)
  • Retrieve 2YHS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YHS from S2C, [Save to disk]
  • Re-refined 2yhs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YHS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YHS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YHS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yhs] [2yhs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2YHS: [AAA] [SRP54] [SRP54_N ] by SMART
  • Other resources with information on 2YHS
  • Community annotation for 2YHS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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