2YI5 Chaperone date May 10, 2011
title Structural Characterization Of 5-Aryl-4-(5-Substituted-2-4- Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors.
authors S.M.Roe, C.Prodromou, L.H.Pearl
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 1-229
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38, Hsp90;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.1949 R_Free 0.2893
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.870 90.310 88.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand YI5 BindingDB enzyme
Primary referenceCo-crystalization and in vitro biological characterization of 5-aryl-4-(5-substituted-2-4-dihydroxyphenyl)-1,2,3-thiadiazole hsp90 inhibitors., Sharp SY, Roe SM, Kazlauskas E, Cikotiene I, Workman P, Matulis D, Prodromou C, PLoS One. 2012;7(9):e44642. Epub 2012 Sep 11. PMID:22984537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2yi5.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2YI5
  • CSU: Contacts of Structural Units for 2YI5
  • Structure Factors (531 Kb)
  • Retrieve 2YI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YI5 from S2C, [Save to disk]
  • Re-refined 2yi5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YI5, from MSDmotif at EBI
  • Fold representative 2yi5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yi5_A] [2yi5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YI5: [HATPase_c ] by SMART
  • Alignments of the sequence of 2YI5 with the sequences similar proteins can be viewed for 2YI5's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2YI5
  • Community annotation for 2YI5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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