OCA Atlas for 2YI8

2YI8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CL, K

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, D, C, A, B	RNA-directed 5'-3' RNA polym...

Primary reference

The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment., Graham SC, Sarin LP, Bahar MW, Myers RA, Stuart DI, Bamford DH, Grimes JM, PLoS Pathog. 2011 Jun;7(6):e1002085. Epub 2011 Jun 23. PMID:21731487

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1246 Kb) [Save to disk]

Biological Unit Coordinates (2yi8.pdb1.gz) 255 Kb

Biological Unit Coordinates (2yi8.pdb2.gz) 255 Kb

Biological Unit Coordinates (2yi8.pdb3.gz) 255 Kb

Biological Unit Coordinates (2yi8.pdb4.gz) 251 Kb

Biological Unit Coordinates (2yi8.pdb5.gz) 252 Kb

LPC: Ligand-Protein Contacts for 2YI8

CSU: Contacts of Structural Units for 2YI8

Structure Factors (5506 Kb)

Retrieve 2YI8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YI8 from S2C, [Save to disk]

Re-refined 2yi8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YI8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yi8] [2yi8_A] [2yi8_B] [2yi8_C] [2yi8_D] [2yi8_E]

SWISS-PROT database:

Domain found in 2YI8: [GLA ] by SMART

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