2YIY Transferase Transferase Activator date May 17, 2011
title Crystal Structure Of Compound 8 Bound To Tak1-Tab
authors D.G.Brown, C.Phillips
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 7, Activated Kinase 1 And Map3k7-Binding Protein 1;
Chain: A
Fragment: Kinase Domain, Residues 31-303, C-Terminal Domain 468-497;
Synonym: Transforming Growth Factor-Beta-Activated Kinase 1 Activated Kinase 1, Protein Kinase Transforming Growth Fact Activated Kinase 1 Tak-1 Mitogen-Activated Protein Kinase K Kinase 7-Interacting Protein 1, Tgf-Beta-Activated Kinase 1 Protein 1, Tak1-Binding Protein 1;
Ec: 2.7.11.25
Engineered: Yes
Other_details: Chimeric Protein
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: I 2 2 2
R_factor 0.188 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.401 133.422 145.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand YIY enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2yiy.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2YIY
  • CSU: Contacts of Structural Units for 2YIY
  • Structure Factors (682 Kb)
  • Retrieve 2YIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YIY from S2C, [Save to disk]
  • Re-refined 2yiy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YIY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YIY, from MSDmotif at EBI
  • Fold representative 2yiy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yiy_A] [2yiy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YIY: [STYKc ] by SMART
  • Other resources with information on 2YIY
  • Community annotation for 2YIY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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