2YJA Hormone Receptor Peptide date May 19, 2011
title Stapled Peptides Binding To Estrogen Receptor Alpha.
authors C.Phillips, L.R.Roberts, M.Schade, R.Bazin, A.Bent, N.L.Davies, S. R.Moore, A.D.Pannifer, D.G.Brown, A.R.Pickford, A.Scott, B.Xu
compound source
Molecule: Stapled Peptide
Chain: A
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Estrogen Receptor
Chain: B
Fragment: Ligand-Binding Domain, Residues 299-551
Synonym: Er, Er-Alpha, Estradiol Receptor, Nuclear Receptor Subfamily 3 Group A Member 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.1976 R_Free 0.2342
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.032 110.407 65.192 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand ACE, EST, MK8, NH2 BindingDB enzyme
Primary referenceDesign and structure of stapled peptides binding to estrogen receptors., Phillips C, Roberts LR, Schade M, Bazin R, Bent A, Davies NL, Moore R, Pannifer AD, Pickford AR, Prior SH, Read CM, Scott A, Brown DG, Xu B, Irving SL, J Am Chem Soc. 2011 Jun 29;133(25):9696-9. Epub 2011 Jun 6. PMID:21612236
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2yja.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2YJA
  • CSU: Contacts of Structural Units for 2YJA
  • Structure Factors (315 Kb)
  • Retrieve 2YJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YJA from S2C, [Save to disk]
  • Re-refined 2yja structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YJA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YJA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yja_A] [2yja_B] [2yja]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YJA: [HOLI ] by SMART
  • Other resources with information on 2YJA
  • Community annotation for 2YJA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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