2YJW Chaperone date May 24, 2011
title Tricyclic Series Of Hsp90 Inhibitors
authors A.Dupuy, F.Vallee
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Domain, Residues 18-233
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38, Hsp90;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 2 2
R_factor 0.1864 R_Free 0.2096
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.700 89.090 100.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.61 Å
ligand YJW BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTricyclic Series of Heat Shock Protein 90 (Hsp90) Inhibitors Part I: Discovery of Tricyclic Imidazo[4,5-c]pyridines as Potent Inhibitors of the Hsp90 Molecular Chaperone., Vallee F, Carrez C, Pilorge F, Dupuy A, Parent A, Bertin L, Thompson F, Ferrari P, Fassy F, Lamberton A, Thomas A, Arrebola R, Guerif S, Rohaut A, Certal V, Ruxer JM, Delorme C, Jouanen A, Dumas J, Grepin C, Combeau C, Goulaouic H, Dereu N, Mikol V, Mailliet P, Minoux H, J Med Chem. 2011 Oct 27;54(20):7206-19. Epub 2011 Oct 5. PMID:21972823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2yjw.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 2YJW
  • CSU: Contacts of Structural Units for 2YJW
  • Structure Factors (514 Kb)
  • Retrieve 2YJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YJW from S2C, [Save to disk]
  • Re-refined 2yjw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YJW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YJW, from MSDmotif at EBI
  • Fold representative 2yjw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yjw_A] [2yjw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2YJW with the sequences similar proteins can be viewed for 2YJW's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2YJW
  • Community annotation for 2YJW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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