2YLY Receptor date Jun 06, 2011
title Sulfonamides As Selective Estrogen Receptor Beta Agonists.
authors L.R.Roberts, D.Armour, C.Barker, R.Bazin, K.Bess, A.Brown, D.Favor M.Mackenny, N.Pullen, A.Stennett, L.Strand, M.Styles, C.Phillips
compound source
Molecule: Estrogen Receptor Beta
Chain: A, B
Fragment: Ligand Binding Domain, Residues 260-500
Synonym: Er-Beta, Nuclear Receptor Subfamily 3 Group A Memb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.2354 R_Free 0.2749
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.720 116.720 186.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand SO4, SU4 BindingDB enzyme
Primary referenceSulfonamides as selective oestrogen receptor beta agonists., Roberts LR, Armor D, Barker C, Bent A, Bess K, Brown A, Favor DA, Ellis D, Irving SL, MacKenny M, Phillips C, Pullen N, Stennett A, Strand L, Styles M, Bioorg Med Chem Lett. 2011 Oct 1;21(19):5680-3. Epub 2011 Aug 16. PMID:21885279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2yly.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2YLY
  • CSU: Contacts of Structural Units for 2YLY
  • Structure Factors (213 Kb)
  • Retrieve 2YLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YLY from S2C, [Save to disk]
  • Re-refined 2yly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YLY in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YLY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YLY, from MSDmotif at EBI
  • Fold representative 2yly from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yly_B] [2yly] [2yly_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2YLY: [HOLI ] by SMART
  • Other resources with information on 2YLY
  • Community annotation for 2YLY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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