2YMB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
D, B, C, A


Primary referenceESCRT-III binding protein MITD1 is involved in cytokinesis and has an unanticipated PLD fold that binds membranes., Hadders MA, Agromayor M, Obita T, Perisic O, Caballe A, Kloc M, Lamers MH, Williams RL, Martin-Serrano J, Proc Natl Acad Sci U S A. 2012 Oct 8. PMID:23045692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2ymb.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (2ymb.pdb2.gz) 68 Kb
  • CSU: Contacts of Structural Units for 2YMB
  • Structure Factors (350 Kb)
  • Retrieve 2YMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YMB from S2C, [Save to disk]
  • Re-refined 2ymb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ymb_H] [2ymb] [2ymb_A] [2ymb_B] [2ymb_C] [2ymb_D] [2ymb_F]
  • SWISS-PROT database:
  • Domain found in 2YMB: [MIT ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science