2YMD	Receptor	date	Oct 09, 2012
title	Crystal Structure Of A Mutant Binding Protein (5htbp-Achbp) In Complex With Serotonin (5-Hydroxytryptamine)
authors	D.Kesters, A.J.Thompson, M.Brams, R.V.Elk, R.Spurny, M.Geitmann, J.M.Villalgordo, A.Guskov, U.H.Danielson, S.C.R.Lummis, A.B.Smi C.Ulens
compound		source
Molecule: Soluble Acetylcholine Receptor Chain: A, B, C, D, E, F, G, H, I, J Fragment: Acetylcholine Binding Domain, Residues 20-231 Synonym: Achbp Engineered: Yes Mutation: Yes		Organism_scientific: Aplysia Californica Organism_common: California Sea Hare Organism_taxid: 6500 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21 Expression_system_vector_type: Plasmid Expression_system_vector: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.1591 R_Free 0.2011
crystal cell	length a length b length c angle alpha angle beta angle gamma 203.565 140.064 126.528 90.00 99.08 90.00
method	X-Ray Diffraction	resolution	1.96 Å
ligand	GOL, PO4, SRO	enzyme
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	Structural basis of ligand recognition in 5-HT3 receptors., Kesters D, Thompson AJ, Brams M, van Elk R, Spurny R, Geitmann M, Villalgordo JM, Guskov A, Helena Danielson U, Lummis SC, Smit AB, Ulens C, EMBO Rep. 2012 Nov 30. doi: 10.1038/embor.2012.189. PMID:23196367

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (779 Kb) [Save to disk] Biological Unit Coordinates (2ymd.pdb1.gz) 747 Kb Biological Unit Coordinates (2ymd.pdb2.gz) 376 Kb Biological Unit Coordinates (2ymd.pdb3.gz) 376 Kb LPC: Ligand-Protein Contacts for 2YMD CSU: Contacts of Structural Units for 2YMD Structure Factors (3066 Kb) Retrieve 2YMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YMD from S2C, [Save to disk] Re-refined 2ymd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YMD in 3D

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Visual 3D analysis of 2YMD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YMD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ymd_I] [2ymd_F] [2ymd_E] [2ymd_J] [2ymd] [2ymd_D] [2ymd_C] [2ymd_B] [2ymd_H] [2ymd_G] [2ymd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 2YMD

Community annotation for 2YMD at PDBWiki (http://pdbwiki.org)

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