2YMO	Membrane Protein	date	Oct 09, 2012
title	Crystal Structure Of Pf12 Tandem 6-Cys Domains From Plasmodi Falciparum
authors	M.L.Tonkin, S.A.Arredondo, B.C.Loveless, M.E.Grigg, L.H.Miller, M.J.Boulanger
compound		source
Molecule: Pf12 Chain: A Fragment: Tandem S4845 Domains, Residues 28-304 Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_taxid: 36329 Strain: 3d7 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67b
symmetry	Space Group: P 21 21 21	R_factor 0.240 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.660 76.870 85.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
Primary reference	Structural and biochemical characterization of Plasmodium falciparum 12 (Pf12) reveals a unique inter-domain organization and the potential for an antiparallel arrangement with Pf41., Tonkin ML, Arredondo SA, Loveless BC, Serpa JJ, Makepeace KA, Sundar N, Petrotchenko EV, Miller LH, Grigg ME, Boulanger MJ, J Biol Chem. 2013 Mar 19. PMID:23511632

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (2ymo.pdb1.gz) 37 Kb CSU: Contacts of Structural Units for 2YMO Structure Factors (300 Kb) Retrieve 2YMO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YMO from S2C, [Save to disk] Re-refined 2ymo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YMO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YMO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YMO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ymo_A] [2ymo] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YMO: [s48_45 ] by SMART

Other resources with information on 2YMO

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