2YPR	Transcription	date	Oct 31, 2012
title	Crystal Structure Of The Dna Binding Ets Domain Of Human Pro
authors	C.K.Allerston, C.Cooper, M.Vollmar, T.Krojer, F.Von Delft, J.Weig C.H.Arrowsmith, C.Bountra, A.Edwards, O.Gileadi
compound		source
Molecule: Protein Fev Chain: A, B Fragment: Ets Domain, Residues 42-141 Synonym: Fifth Ewing Variant Protein, Pc12 Ets Domain-Conta Transcription Factor 1, Pc12 Ets Factor 1, Pet-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: R3-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 43 3 2	R_factor 0.216 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.770 130.770 130.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.64 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (2ypr.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 2YPR CSU: Contacts of Structural Units for 2YPR Structure Factors (385 Kb) Retrieve 2YPR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YPR from S2C, [Save to disk] Re-refined 2ypr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YPR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YPR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YPR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ypr_B] [2ypr] [2ypr_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2YPR: [ETS ] by SMART

Other resources with information on 2YPR

Community annotation for 2YPR at PDBWiki (http://pdbwiki.org)

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