2YQE Dna Binding Protein date Mar 30, 2007
title Solution Structure Of The Arid Domain Of Jarid1d Protein
authors W.Tanabe, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouz S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Jumonjiarid Domain-Containing Protein 1d
Chain: A
Fragment: Arid Domain
Synonym: Protein Smcy, Histocompatibility Y Antigen, H-Y
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smcy, Hy, Hya, Jarid1d, Kiaa0234
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060731-15
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (2yqe.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2YQE
  • Original NMR restraints for 2YQE from PDB
  • Retrieve 2YQE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YQE from S2C, [Save to disk]
    • View 2YQE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YQE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YQE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yqe] [2yqe_A]
  • SWISS-PROT database: [Q9BY66]
  • Domain organization of [KDM5D_HUMAN] by SWISSPFAM
  • Domains found in 2YQE: [ARID] [BRIGHT ] by SMART
    • Other resources with information on 2YQE
  • Community annotation for 2YQE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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