2YQL Transcription date Mar 30, 2007
title Solution Structure Of The Phd Domain In Phd Finger Protein 21a
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Phd Finger Protein 21a
Chain: A
Fragment: Phd Domain
Synonym: Braf35-Hdac Complex Protein Bhc80, Bhc80a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf21a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061030-12
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2YQL
  • CSU: Contacts of Structural Units for 2YQL
  • Original NMR restraints for 2YQL from PDB
  • Retrieve 2YQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YQL from S2C, [Save to disk]
  • View 2YQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YQL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YQL, from MSDmotif at EBI
  • Fold representative 2yql from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yql_A] [2yql]
  • SWISS-PROT database: [Q96BD5]
  • Domain organization of [PF21A_HUMAN] by SWISSPFAM
  • Domains found in 2YQL: [PHD] [RING ] by SMART
  • Alignments of the sequence of 2YQL with the sequences similar proteins can be viewed for 2YQL's classification [PF21A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PF21A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2YQL
  • Community annotation for 2YQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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