2YQL	Transcription	date	Mar 30, 2007
title	Solution Structure Of The Phd Domain In Phd Finger Protein 21a
authors	F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Phd Finger Protein 21a Chain: A Fragment: Phd Domain Synonym: Braf35-Hdac Complex Protein Bhc80, Bhc80a Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Phf21a Expression_system_vector_type: Plasmid Expression_system_plasmid: P061030-12 Other_details: Cell-Free Protein Synthesis
method	Solution NMR
ligand	ZN	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk] LPC: Ligand-Protein Contacts for 2YQL CSU: Contacts of Structural Units for 2YQL Original NMR restraints for 2YQL from PDB Retrieve 2YQL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YQL from S2C, [Save to disk]

View 2YQL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2YQL

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2YQL, from MSDmotif at EBI Fold representative 2yql from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yql_A] SWISS-PROT database: [Q96BD5] Domain organization of [PF21A_HUMAN] by SWISSPFAM Domains found in 2YQL: [PHD] [RING ] by SMART Alignments of the sequence of 2YQL with the sequences similar proteins can be viewed for 2YQL's classification [PF21A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PF21A_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2YQL

Community annotation for 2YQL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

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