2YQL Transcription date Mar 30, 2007
title Solution Structure Of The Phd Domain In Phd Finger Protein 2
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Phd Finger Protein 21a
Chain: A
Fragment: Phd Domain
Synonym: Braf35-Hdac Complex Protein Bhc80, Bhc80a
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf21a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061030-12
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (2yql.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2YQL
  • CSU: Contacts of Structural Units for 2YQL
  • Original NMR restraints for 2YQL from PDB
  • Retrieve 2YQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YQL from S2C, [Save to disk]
    • View 2YQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YQL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yql_A] [2yql]
  • SWISS-PROT database: [Q96BD5]
  • Domain organization of [PF21A_HUMAN] by SWISSPFAM
  • Domains found in 2YQL: [PHD] [RING ] by SMART
    • Other resources with information on 2YQL
  • Community annotation for 2YQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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