2YQP Gene Regulation, Hydrolase date Mar 30, 2007
title Solution Structure Of The Zf-Hit Domain In Dead (Asp-Glu-Ala Polypeptide 59
authors F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Tarada, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable Atp-Dependent Rna Helicase Ddx59
Chain: A
Fragment: Zf-Hit Domain
Synonym: Dead Box Protein 59, Zinc Finger Hit Domain-Contai Protein 5;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rp11-92g12.2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060925-04
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.6.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (2yqp.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 2YQP
  • CSU: Contacts of Structural Units for 2YQP
  • Original NMR restraints for 2YQP from PDB
  • Retrieve 2YQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YQP from S2C, [Save to disk]
  • View 2YQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YQP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YQP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yqp] [2yqp_A]
  • SWISS-PROT database: [Q5T1V6]
  • Domain organization of [DDX59_HUMAN] by SWISSPFAM
  • Other resources with information on 2YQP
  • Community annotation for 2YQP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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