2YRZ Cell Adhesion date Apr 03, 2007
title Solution Structure Of The Fibronectin Type III Domain Of Human Integrin Beta-4
authors H.Abe, A.Sasagawa, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Integrin Beta-4
Chain: A
Fragment: Fn3
Synonym: Gp150, Cd104 Antigen
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050322-10
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2YRZ
  • Original NMR restraints for 2YRZ from PDB
  • Retrieve 2YRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YRZ from S2C, [Save to disk]
    • View 2YRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YRZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YRZ, from MSDmotif at EBI
  • Fold representative 2yrz from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yrz] [2yrz_A]
  • SWISS-PROT database: [P16144]
  • Domain organization of [ITB4_HUMAN] by SWISSPFAM
  • Domain found in 2YRZ: [FN3 ] by SMART
    • Other resources with information on 2YRZ
  • Community annotation for 2YRZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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