2YS0 Hydrolase date Apr 03, 2007
title Solution Structure Of The Somatomedin B Domain Of Human Ecto Pyrophosphatasephosphodiesterase Family Member
authors H.Abe, A.Sasagawa, N.Tochio, T.Tomizawa, S.Koshiba, M.Inoue, T.Kig S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Ectonucleotide Pyrophosphatasephosphodiesterase Member 1;
Chain: A
Fragment: Somatomedin_b
Synonym: 'Ectonucleotide Pyrophosphatasephosphodiesterase 1, Phosphodiesterase Inucleotide Pyrophosphatase 1, Plasma Membrane Glycoprotein Pc-1;
Ec: 3.1.4.1, 3.6.1.9
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Enpp1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050118-03
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.4.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (2ys0.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2YS0
  • Original NMR restraints for 2YS0 from PDB
  • Retrieve 2YS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YS0 from S2C, [Save to disk]
    • View 2YS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YS0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YS0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ys0] [2ys0_A]
  • SWISS-PROT database: [P22413]
  • Domain organization of [ENPP1_HUMAN] by SWISSPFAM
  • Domain found in 2YS0: [SO ] by SMART
    • Other resources with information on 2YS0
  • Community annotation for 2YS0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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