2YSA Metal Binding Protein date Apr 03, 2007
title Solution Structure Of The Zinc Finger Cchc Domain From The H Retinoblastoma-Binding Protein 6 (Retinoblastoma-Binding Q Rbq-1)
authors S.Ohnishi, M.Sato, N.Tochio, S.Koshiba, T.Harada, S.Watanabe, T.Ki S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Retinoblastoma-Binding Protein 6
Chain: A
Fragment: Zf-Cchc Domain
Synonym: P53-Associated Cellular Protein Of Testis, Prolife Potential-Related Protein, Protein P2p-R, Retinoblastoma-Bi Protein 1, Protein Rbq-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp6
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060522-23
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (2ysa.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2YSA
  • CSU: Contacts of Structural Units for 2YSA
  • Retrieve 2YSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSA from S2C, [Save to disk]
  • View 2YSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YSA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YSA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysa_A] [2ysa]
  • SWISS-PROT database: [Q7Z6E9]
  • Domain organization of [RBBP6_HUMAN] by SWISSPFAM
  • Domain found in 2YSA: [ZnF_C2HC ] by SMART
  • Other resources with information on 2YSA
  • Community annotation for 2YSA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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