OCA Atlas for 2YSB

2YSB

Protein Binding

date

Apr 03, 2007

title

Solution Structure Of The First Ww Domain From The Mouse Sal Homolog 1 Protein (Sav1)

authors

S.Ohnishi, M.Sato, S.Koshiba, T.Harada, S.Watanabe, T.Kigawa, S.Yo Riken Structural Genomicsproteomics Initiative (Rsgi)

compound

source

Molecule: Salvador Homolog 1 Protein
Chain: A
Fragment: Ww Domain
Synonym: 45 Kda Ww Domain Protein, Mww45
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Sav1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061010-04
Other_details: Cell-Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]

Biological Unit Coordinates (2ysb.pdb1.gz) 12 Kb

CSU: Contacts of Structural Units for 2YSB

Retrieve 2YSB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2YSB from S2C, [Save to disk]

View 2YSB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YSB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2YSB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ysb_A] [2ysb]

SWISS-PROT database: [Q8VEB2]

Domain organization of [SAV1_MOUSE] by SWISSPFAM

Domain found in 2YSB: [WW ] by SMART

Other resources with information on 2YSB

Community annotation for 2YSB at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]