2YSM Transferase date Apr 03, 2007
title Solution Structure Of The Second And Third Phd Domain From H Lysine N-Methyltransferase 2c (Kmt2cmll3)
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsprote Initiative (Rsgi)
compound source
Molecule: Myeloidlymphoid Or Mixed-Lineage Leukemia Protei Homolog;
Chain: A
Fragment: Phd Domain
Synonym: Histone-Lysine N-Methyltransferase, H3 Lysine-4 Sp Mll3, Homologous To Alr Protein;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mll3, Halr, Kiaa1506
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P070115-52
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.1.1.43 BRENDA
note 2YSM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (2ysm.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2YSM
  • CSU: Contacts of Structural Units for 2YSM
  • Original NMR restraints for 2YSM from PDB
  • Retrieve 2YSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSM from S2C, [Save to disk]
  • View 2YSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YSM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YSM, from MSDmotif at EBI
  • Fold representative 2ysm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysm] [2ysm_A]
  • SWISS-PROT database: [Q8NEZ4]
  • Domain organization of [MLL3_HUMAN] by SWISSPFAM
  • Domains found in 2YSM: [PHD] [RING ] by SMART
  • Other resources with information on 2YSM
  • Community annotation for 2YSM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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