2YSR Signaling Protein date Apr 03, 2007
title Solution Structure Of The Dep Domain From Human Dep Domain- Containing Protein 1
authors H.P.Zhang, F.Hayahsi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Dep Domain-Containing Protein 1
Chain: A
Fragment: Dep Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Depdc1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060904-15
Other_details: Cell-Free Protein Synthesis
methodSolution NMR

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (567 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2YSR
  • Retrieve 2YSR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSR from S2C, [Save to disk]
  • View 2YSR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YSR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YSR, from MSDmotif at EBI
  • Fold representative 2ysr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysr_A] [2ysr]
  • SWISS-PROT database: [Q5TB30]
  • Domain organization of [DEP1A_HUMAN] by SWISSPFAM
  • Domain found in 2YSR: [DEP ] by SMART
  • Other resources with information on 2YSR
  • Community annotation for 2YSR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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