2YSV Metal Binding Protein date Apr 04, 2007
title Solution Structure Of C2h2 Type Zinc Finger Domain 17 In Zin Protein 473
authors K.Tsuda, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoya Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger Protein 473
Chain: A
Fragment: Zinc Finger Domain
Synonym: Zinc Finger Protein 100 Homolog, Zfp-100
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf473, Kiaa1141, Zfp100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P070115-34
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (2ysv.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2YSV
  • CSU: Contacts of Structural Units for 2YSV
  • Retrieve 2YSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YSV from S2C, [Save to disk]
    • View 2YSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YSV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YSV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ysv_A] [2ysv]
  • SWISS-PROT database: [Q8WTR7]
  • Domain organization of [ZN473_HUMAN] by SWISSPFAM
  • Domain found in 2YSV: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2YSV
  • Community annotation for 2YSV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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