2YSW	Lyase	date	Apr 04, 2007
title	Crystal Structure Of The 3-Dehydroquinate Dehydratase From A Aeolicus Vf5
authors	T.Tanaka, T.S.Kumarevel, A.Ebihara, L.Chen, Z.Q.Fu, J.Chrzas, B.C. S.Kuramitsu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: 3-Dehydroquinate Dehydratase Chain: A, B, C Synonym: 3-Dehydroquinase, Type I Dhqase Ec: 4.2.1.10 Engineered: Yes		Organism_scientific: Aquifex Aeolicus Organism_taxid: 224324 Strain: Vf5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Codonplus-Ril-X Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a
symmetry	Space Group: P 43 21 2	R_factor 0.218 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.796 131.796 108.012 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand		enzyme	Lyase E.C.4.2.1.10 BRENDA
Gene Ontology	Chain Function Process Component A, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2ysw.pdb1.gz) 75 Kb Biological Unit Coordinates (2ysw.pdb2.gz) 74 Kb CSU: Contacts of Structural Units for 2YSW Likely Quarternary Molecular Structure file(s) for 2YSW Structure Factors (385 Kb) Retrieve 2YSW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YSW from S2C, [Save to disk] Re-refined 2ysw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YSW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YSW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YSW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ysw] [2ysw_B] [2ysw_A] [2ysw_C] SWISS-PROT database: [O66440] Domain organization of [AROD_AQUAE] by SWISSPFAM

Other resources with information on 2YSW

Community annotation for 2YSW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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